Discover MCP Servers

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Noodle Biomedical Literature Discovery MCP — search papers and traverse citation or semantic literature graphs.

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Run reproducible bioinformatics pipelines from an AI assistant over MCP, with verifiable provenance

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Headless PyMOL MCP server for molecular visualization, GROMACS/LAMMPS MD workflows, and clathrate-hydrate cage analysis

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MCP server for spatial transcriptomics analysis through natural language interfaces.

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MCP (Model Context Protocol) server for biothings

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MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

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BioMed MCP over AlphaFold DB + 8 public sources, with SQLite knowledge graph, offline mode, and explicit clinical-use limits.

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Auditable UniProt MCP server with per-response SHA-256 provenance, release pinning, verification, and offline replay.

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An open-source, stateless Model Context Protocol (MCP) framework bridging biological datasets (NCBI/UniProt) with deterministic physical coordinates for robotic automation.

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An MCP server to interact with the UCSC Genome Browser API

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Plant genomics MCP server — 32 tools across 11 backends (Ensembl Plants, Phytozome, UniProt, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR) + cross-source synthesis. stdio + Streamable-HTTP transports.